Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs12235198 | chr9:18303984 | C/T | 6.31E-6 | 407 | 15.32 | 15.38 | 8.07 | KM Plot |
| LGG | rs12240651 | chr10:943656 | A/G | 3.61E-5 | 405 | 14.9 | 17.73 | 12.17 | KM Plot |
| LGG | rs12241664 | chr10:89937643 | C/A | 6.72E-5 | 404 | 14.78 | 18.72 | 5.52 | KM Plot |
| LGG | rs12243135 | chr10:2743280 | C/T | 1.21E-6 | 407 | 15.47 | 12.17 | 0 | KM Plot |
| LGG | rs12244253 | chr10:889320 | G/T | 2.63E-5 | 403 | 14.9 | 17.73 | 12.17 | KM Plot |
| LGG | rs12244355 | chr10:944465 | T/C | 3.79E-5 | 404 | 14.75 | 17.73 | 12.17 | KM Plot |
| LGG | rs12247278 | chr10:13025718 | A/G | 0.00014 | 407 | 20.17 | 16.3 | 15.17 | KM Plot |
| LGG | rs12247306 | chr10:2660816 | A/G | 4.73E-9 | 407 | 19.03 | 12.17 | 15.57 | KM Plot |
| LGG | rs12247701 | chr10:89951719 | T/C | 4.35E-5 | 403 | 14.8 | 18.72 | 5.52 | KM Plot |
| LGG | rs12249634 | chr10:872744 | G/A | 0.000226 | 403 | 15.02 | 17.73 | 13.3 | KM Plot |
| LGG | rs12249828 | chr10:894838 | C/T | 4.74E-6 | 407 | 15.17 | 17.03 | 11.7 | KM Plot |
| LGG | rs12250898 | chr10:89957523 | C/T | 3.71E-5 | 404 | 14.85 | 18.43 | 13.45 | KM Plot |
| LGG | rs12250936 | chr10:870109 | C/T | 3.64E-5 | 406 | 15.13 | 17.73 | 12.17 | KM Plot |
| LGG | rs12250937 | chr10:900209 | C/T | 2.96E-6 | 403 | 15.02 | 17.73 | 10.57 | KM Plot |
| LGG | rs12255785 | chr10:63319758 | G/T | 8.28E-5 | 405 | 15.88 | 11.53 | 17.07 | KM Plot |